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u
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Here is a list of all documented namespace members with links to the namespaces they belong to:
- a -
add_macs_results() :
bbcflib::chipseq
- b -
boxplot() :
bbcflib::bFlatMajor::figure::rplots
build_pileup() :
bbcflib::rnaseq
- c -
cached() :
bbcflib::genrep_cache
cached_ass() :
bbcflib::genrep_cache
camelPeaks() :
bbcflib::chipseq
cat() :
bbcflib::common
clean_before_deseq() :
bbcflib::rnaseq
clean_deseq_output() :
bbcflib::rnaseq
concat_fields() :
bbcflib::btrack
convert() :
bbcflib::btrack
coverageBed() :
bbcflib::common
coverageInRepeats() :
bbcflib::createlib
createLibrary() :
bbcflib::createlib
- d -
dec() :
bbcflib::genrep_cache
density_to_countsPerFrag() :
bbcflib::c4seq
differential_analysis() :
bbcflib::rnaseq
- e -
ensembl_to_ucsc() :
bbcflib::btrack
estimate_size_factors() :
bbcflib::rnaseq
- f -
fastq_dump() :
bbcflib::mapseq
fastqc() :
bbcflib::mapseq
FDR_threshold() :
bbcflib::motif
fetch_labels() :
bbcflib::rnaseq
fetch_mappings() :
bbcflib::rnaseq
format_float() :
bbcflib::btrack
format_int() :
bbcflib::btrack
fusion() :
bbcflib::rnaseq
- g -
genes_expression() :
bbcflib::rnaseq
get_fastq_files() :
bbcflib::mapseq
get_files() :
bbcflib::common
get_project() :
bbcflib::gdv
getEnzymeSeqId() :
bbcflib::createlib
getRestEnzymeOccAndSeq() :
bbcflib::createlib
gzipfile() :
bbcflib::common
- h -
heatmap() :
bbcflib::bFlatMajor::figure::rplots
- i -
init() :
bbcflib::genrep_cache
int_to_strand() :
bbcflib::btrack
intersect_many_bed() :
bbcflib::common
intersectBed() :
bbcflib::common
isnum() :
bbcflib::common
- j -
join_pdf() :
bbcflib::common
- l -
lib_exists() :
bbcflib::createlib
lineplot() :
bbcflib::bFlatMajor::figure::rplots
load_paramsFile() :
bbcflib::demultiplex
loadPrimers() :
bbcflib::c4seq
lsqnonneg() :
bbcflib::rnaseq
- m -
macs() :
bbcflib::chipseq
map_chromosomes() :
bbcflib::btrack
meme() :
bbcflib::motif
merge_sql() :
bbcflib::common
motif_scan() :
bbcflib::motif
multiple_tracks() :
bbcflib::gdv
- n -
new_project() :
bbcflib::gdv
normalize_url() :
bbcflib::common
- p -
pairs() :
bbcflib::bFlatMajor::figure::rplots
parallel_exonerate() :
bbcflib::demultiplex
parallel_meme() :
bbcflib::motif
parse_fragFile() :
bbcflib::createlib
parse_meme_xml() :
bbcflib::motif
parseConfig() :
bbcflib::frontend
positive() :
bbcflib::rnaseq
prepareReport() :
bbcflib::demultiplex
- r -
readcols() :
bbcflib::common
rnaseq_workflow() :
bbcflib::rnaseq
run() :
bbcflib::bFlatMajor
run_deconv() :
bbcflib::chipseq
run_fastqc() :
bbcflib::mapseq
run_glm() :
bbcflib::rnaseq
- s -
save_motif_profile() :
bbcflib::motif
save_results() :
bbcflib::rnaseq
scatterplot() :
bbcflib::bFlatMajor::figure::rplots
score_threshold() :
bbcflib::btrack
segToFrag() :
bbcflib::c4seq
send_it() :
bbcflib::gdv
set_file_descr() :
bbcflib::common
single_track() :
bbcflib::gdv
split_field() :
bbcflib::btrack
sqlite_to_false_discovery_rate() :
bbcflib::motif
strand_to_int() :
bbcflib::btrack
- t -
timer() :
bbcflib::common
track() :
bbcflib::btrack
transcripts_expression() :
bbcflib::rnaseq
- u -
ucsc_to_ensembl() :
bbcflib::btrack
unique() :
bbcflib::common
unique_filename_in() :
bbcflib::common
- w -
workflow_groups() :
bbcflib::c4seq
,
bbcflib::chipseq
writecols() :
bbcflib::common
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