bbcflib::demultiplex Namespace Reference

Functions
def	exportToFasta
def	fastqToFasta
def	split_exonerate
def	exonerate
def	parallel_exonerate
	max score = len*5, penalty for len/2 mismatches = -9*len/2 => score = len/2
def	load_paramsFile
def	prepareReport
def	createReport
def	workflow_groups
def	getSeqToFilter
def	filterSeq

---

Detailed Description

===========================
Module: bbcflib.demultiplex
===========================

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Function Documentation

def bbcflib::demultiplex::load_paramsFile

(

paramsfile

)

Return a dictionary with the parameters required for exonerate

def bbcflib::demultiplex::prepareReport	(		ex,
			name,
			tot_counts,
			counts_primers,
			counts_primers_filtered
	)

Example::
    Primer  Total_number_of_reads   nFiltered       nValidReads
    HoxD13  9406932 4296211 5110721
    HoxD4   3835395 415503  3419892
    HoxD9   6908054 594449  6313605
    Unclassified    1304048
    Total   21454429