List of all members.
Public Member Functions |
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def | __init__ |
| def | __enter__ |
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def | __exit__ |
| def | __iter__ |
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def | open |
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def | close |
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def | save |
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def | read |
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def | write |
Public Attributes |
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| path |
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| filehandle |
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| format |
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| fields |
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| assembly |
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| chrmeta |
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| info |
Detailed Description
Metaclass regrouping the track properties. Subclasses for each specific format
are in `btrack/text.py` and are instanciated when ``btrack.track()`` is called on a file.
.. attribute:: path
Path to the file the Track was generated from.
.. attribute:: filehandle
The Python opened file object from the file found in *self.path*. Can read() and write() it.
.. attribute:: format
Format of the file the track was generated from.
.. attribute:: fields
Fields defining the info contained in the track items.
.. attribute:: assembly
GenRep assembly ID.
.. attribute:: chrmeta
A dictionary with information about the species' chromosomes, or a genrep assembly name.
.. attribute:: info
A dictionary with meta-data about the track, e.g. data type, such as::
{'datatype': 'signal'}
Member Function Documentation
| def bbcflib::btrack::Track::__enter__ |
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Called when evaluating the 'with' statement.
| def bbcflib::btrack::Track::__iter__ |
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Iterates on the list of features.
The documentation for this class was generated from the following file:
- /home/rougemon/Data/pipelines/libv2/bbcflib/bbcflib/btrack/__init__.py
1.7.1